{"id":776380,"date":"2021-09-20T12:45:51","date_gmt":"2021-09-20T19:45:51","guid":{"rendered":"https:\/\/cm-edgetun.pages.dev\/en-us\/research\/?post_type=msr-research-item&#038;p=776380"},"modified":"2023-02-13T11:13:33","modified_gmt":"2023-02-13T19:13:33","slug":"effective-deep-learning-approaches-for-predicting-covid-19-outcomes-from-chest-computed-tomography-volumes","status":"publish","type":"msr-research-item","link":"https:\/\/cm-edgetun.pages.dev\/en-us\/research\/publication\/effective-deep-learning-approaches-for-predicting-covid-19-outcomes-from-chest-computed-tomography-volumes\/","title":{"rendered":"Effective Deep Learning Approaches for Predicting COVID-19 Outcomes from Chest Computed Tomography Volumes"},"content":{"rendered":"<p>The rapid evolution of the novel coronavirus SARS-CoV-2 pandemic has resulted in an urgent need for effective clinical tools to reduce transmission and manage severe illness. Numerous teams are quickly developing artificial intelligence approaches to these problems, including using deep learning to predict COVID-19 diagnosis and prognosis from computed tomography (CT) imaging data. In this work, we assess the value of aggregated chest CT data for COVID-19 prognosis compared to clinical metadata alone. We develop a novel patient-level algorithm to aggregate the chest CT volume into a 2D representation that can be easily integrated with clinical metadata to distinguish Novel Coronavirus Pneumonia (COVID-19+) from other cases of viral pneumonia and normal healthy chest CT volumes with state-of-the-art performance. Furthermore, we present a multitask model for joint segmentation of different classes of pulmonary lesions present in COVID-19 infected lungs that can outperform individual segmentation models for each task. We directly compare this multitask segmentation approach to combining feature-agnostic volumetric CT classification feature maps with clinical metadata for predicting mortality. These approaches enable the automated extraction of clinically relevant features from chest CT volumes for risk stratification of COVID-19+ patients.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The rapid evolution of the novel coronavirus SARS-CoV-2 pandemic has resulted in an urgent need for effective clinical tools to reduce transmission and manage severe illness. Numerous teams are quickly developing artificial intelligence approaches to these problems, including using deep learning to predict COVID-19 diagnosis and prognosis from computed tomography (CT) imaging data. In this [&hellip;]<\/p>\n","protected":false},"featured_media":0,"template":"","meta":{"msr-url-field":"","msr-podcast-episode":"","msrModifiedDate":"","msrModifiedDateEnabled":false,"ep_exclude_from_search":false,"_classifai_error":"","msr-author-ordering":null,"msr_publishername":"","msr_publisher_other":"","msr_booktitle":"","msr_chapter":"","msr_edition":"","msr_editors":"","msr_how_published":"","msr_isbn":"","msr_issue":"","msr_journal":"Nature Scientific Reports","msr_number":"","msr_organization":"","msr_pages_string":"","msr_page_range_start":"","msr_page_range_end":"","msr_series":"","msr_volume":"","msr_copyright":"","msr_conference_name":"","msr_doi":"","msr_arxiv_id":"","msr_s2_paper_id":"","msr_mag_id":"","msr_pubmed_id":"","msr_other_authors":"","msr_other_contributors":"","msr_speaker":"","msr_award":"","msr_affiliation":"","msr_institution":"","msr_host":"","msr_version":"","msr_duration":"","msr_original_fields_of_study":"","msr_release_tracker_id":"","msr_s2_match_type":"","msr_citation_count_updated":"","msr_published_date":"2022-2-1","msr_highlight_text":"","msr_notes":"","msr_longbiography":"","msr_publicationurl":"","msr_external_url":"","msr_secondary_video_url":"","msr_conference_url":"","msr_journal_url":"","msr_s2_pdf_url":"","msr_year":0,"msr_citation_count":0,"msr_influential_citations":0,"msr_reference_count":0,"msr_s2_match_confidence":0,"msr_microsoftintellectualproperty":true,"msr_s2_open_access":false,"msr_s2_author_ids":[],"msr_pub_ids":[],"msr_hide_image_in_river":0,"footnotes":""},"msr-research-highlight":[],"research-area":[13553],"msr-publication-type":[193715],"msr-publisher":[],"msr-focus-area":[],"msr-locale":[268875],"msr-post-option":[],"msr-field-of-study":[],"msr-conference":[],"msr-journal":[],"msr-impact-theme":[],"msr-pillar":[],"class_list":["post-776380","msr-research-item","type-msr-research-item","status-publish","hentry","msr-research-area-medical-health-genomics","msr-locale-en_us"],"msr_publishername":"","msr_edition":"","msr_affiliation":"","msr_published_date":"2022-2-1","msr_host":"","msr_duration":"","msr_version":"","msr_speaker":"","msr_other_contributors":"","msr_booktitle":"","msr_pages_string":"","msr_chapter":"","msr_isbn":"","msr_journal":"Nature Scientific Reports","msr_volume":"","msr_number":"","msr_editors":"","msr_series":"","msr_issue":"","msr_organization":"","msr_how_published":"","msr_notes":"","msr_highlight_text":"","msr_release_tracker_id":"","msr_original_fields_of_study":"","msr_download_urls":"","msr_external_url":"","msr_secondary_video_url":"","msr_longbiography":"","msr_microsoftintellectualproperty":1,"msr_main_download":"","msr_publicationurl":"","msr_doi":"","msr_publication_uploader":[{"type":"url","viewUrl":"false","id":"false","title":"https:\/\/www.nature.com\/articles\/s41598-022-05532-0","label_id":"243109","label":0},{"type":"url","viewUrl":"false","id":"false","title":"https:\/\/www.nature.com\/articles\/s41598-022-05532-0.pdf","label_id":"243132","label":0}],"msr_related_uploader":"","msr_citation_count":0,"msr_citation_count_updated":"","msr_s2_paper_id":"","msr_influential_citations":0,"msr_reference_count":0,"msr_arxiv_id":"","msr_s2_author_ids":[],"msr_s2_open_access":false,"msr_s2_pdf_url":null,"msr_attachments":[],"msr-author-ordering":[{"type":"user_nicename","value":"Anusua Trivedi","user_id":40732,"rest_url":"https:\/\/cm-edgetun.pages.dev\/en-us\/research\/wp-json\/microsoft-research\/v1\/researchers?person=Anusua Trivedi"},{"type":"user_nicename","value":"Anthony Ortiz","user_id":39715,"rest_url":"https:\/\/cm-edgetun.pages.dev\/en-us\/research\/wp-json\/microsoft-research\/v1\/researchers?person=Anthony Ortiz"},{"type":"user_nicename","value":"Caleb Robinson","user_id":39606,"rest_url":"https:\/\/cm-edgetun.pages.dev\/en-us\/research\/wp-json\/microsoft-research\/v1\/researchers?person=Caleb Robinson"},{"type":"text","value":"Jocelyn Desbiens","user_id":0,"rest_url":false},{"type":"text","value":"Marian Blazes","user_id":0,"rest_url":false},{"type":"text","value":"Sunil Gupta","user_id":0,"rest_url":false},{"type":"user_nicename","value":"Rahul Dodhia","user_id":41401,"rest_url":"https:\/\/cm-edgetun.pages.dev\/en-us\/research\/wp-json\/microsoft-research\/v1\/researchers?person=Rahul Dodhia"},{"type":"text","value":"Pavan Bhatraju","user_id":0,"rest_url":false},{"type":"text","value":"W Conrad Liles","user_id":0,"rest_url":false},{"type":"text","value":"Aaron Lee","user_id":0,"rest_url":false},{"type":"user_nicename","value":"Juan M. Lavista Ferres","user_id":39552,"rest_url":"https:\/\/cm-edgetun.pages.dev\/en-us\/research\/wp-json\/microsoft-research\/v1\/researchers?person=Juan M. Lavista Ferres"}],"msr_impact_theme":[],"msr_research_lab":[],"msr_event":[],"msr_group":[696544,780706,916890],"msr_project":[918249,778522],"publication":[],"video":[],"msr-tool":[],"msr_publication_type":"article","related_content":{"projects":[{"ID":918249,"post_title":"Treatment &amp; diagnostics","post_name":"treatment-diagnostics","post_type":"msr-project","post_date":"2023-10-25 20:49:14","post_modified":"2023-12-13 11:17:07","post_status":"publish","permalink":"https:\/\/cm-edgetun.pages.dev\/en-us\/research\/project\/treatment-diagnostics\/","post_excerpt":"\"The T-Detect COVID Test is a novel technology that assesses the T cell immune response to COVID-19. Information and scientific data that deepen our understanding of SARS-CoV-2 remain important keys to get ahead of this global pandemic.\" In March 2020, Microsoft and Adaptive Biotechnologies expanded their existing collaboration to map and measure the immune response to multiple diseases and started applying their combined capabilities to COVID-19. In May, Adaptive started enrollment for a virtual clinical&hellip;","_links":{"self":[{"href":"https:\/\/cm-edgetun.pages.dev\/en-us\/research\/wp-json\/wp\/v2\/msr-project\/918249"}]}},{"ID":778522,"post_title":"AI for Health","post_name":"ai-for-health","post_type":"msr-project","post_date":"2023-05-16 14:26:13","post_modified":"2024-10-14 15:42:21","post_status":"publish","permalink":"https:\/\/cm-edgetun.pages.dev\/en-us\/research\/project\/ai-for-health\/","post_excerpt":"AI for Health is a philanthropic program launched by Microsoft, which aims to support nonprofits, researchers, and organizations working on global health challenges. 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