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Medical, health, and genomics

Digital pathology helps decode tumor microenvironments for precision immunotherapy. GigaPath is a novel vision transformer that can scale to gigapixel whole-slide images by adapting dilated attention for digital pathology. In joint work with Providence and UW, we’re sharing Prov-GigaPath, the first whole-slide pathology foundation model pretrained on large-scale real-world data, for advancing clinical research and discovery.

GigaPath: Whole-Slide Foundation Model for Digital Pathology

Research Forum Ep2 | Panel | Transforming the Natural Sciences with AI

Research Forum 2 | Panel Discussion: Transforming the Natural Sciences with AI

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Scaling early detection of esophageal cancer with AI

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Microsoft Health Futures

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Published Date

Publication

Identifying progressive gene network perturbation from single-cell RNA-seq data

Sumit Mukherjee, Alberto Carignano, Georg Seelig, Su-in Lee

2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) | October 2018

Publication

Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data

Koksal A., Beck K., McKenna A., Srivastava S., Bodik R., Wolf-Yadlin A., Fraenkel E., Jasmin Fisher, Gitter A.

Cell Reports 24:3607–3618 | September 2018, Vol 24: pp. 3607-3618

Video

Computational Modelling of Human Epilepsy: from Single Neurons to Pathology

September 12, 2018 | Anatoly Buchin

The mission of Allen Institute is to accelerate the understanding of how the human brain works in health and disease. Epilepsy is the fourth most common neurological disorder and is responsible for significant total global…

Computational Modelling of Human Epilepsy

57:04

Video

Manifold Learning Yields Insight into Complex Biological State Space

September 10, 2018 | David van Dijk, Smita Krishnaswamy

Recent advances in single-cell technologies enable deep insights into cellular development, gene regulation, and phenotypic diversity by measuring gene expression and epigenetic information for thousands of single cells in a single experiment. While these technologies…