illustration of DNA strand and abstract shapes on a computer screen on a green gradient background

Medical, health, and genomics

Digital pathology helps decode tumor microenvironments for precision immunotherapy. GigaPath is a novel vision transformer that can scale to gigapixel whole-slide images by adapting dilated attention for digital pathology. In joint work with Providence and UW, we’re sharing Prov-GigaPath, the first whole-slide pathology foundation model pretrained on large-scale real-world data, for advancing clinical research and discovery.

GigaPath: Whole-Slide Foundation Model for Digital Pathology

Research Forum Ep2 | Panel | Transforming the Natural Sciences with AI

Research Forum 2 | Panel Discussion: Transforming the Natural Sciences with AI

white icons of first aid kit, DNA strand, laptop monitor with overlapping eye, and microscope on a blue and green gradient background

Scaling early detection of esophageal cancer with AI

female doctor / nurse reviewing a tablet

Microsoft Health Futures

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Publication

Mental health in the global south: Challenges and opportunities in HCI for development

Sachin R. Pendse, Naveena Karusala, Divya Siddarth, Pattie Gonsalves, Seema Mehrotra, John A. Naslund, Mamta Sood, Neha Kumar, Amit Sharma

ACM SIGCAS Conference on Computing & Sustainable Societies (COMPASS) | July 2019

Project

Publication

DNA Assembly for Nanopore Data Storage Readout

Randolph Lopez, Yuan-Jyue Chen, Siena Dumas Ang, Sergey Yekhanin, Konstantin Makarychev, Miklos Z. Racz, Georg Seelig, Karin Strauss, Luis Ceze

Nature Communications | July 2019, Vol 10:2933

Project

Tool

Dataset for Learning Karel Programs

A synthetic dataset of visual programs for the program synthesis task, now a common benchmark in the academic community. This webpage hosts the dataset for synthetically generated Karel programs that are used for training and…

GitHub

Publication

A Deep Learning System for Automated Angle-Closure Detection in Anterior Segment Optical Coherence Tomography Images

Huazhu Fu, Mani Baskaran, Yanwu Xu, Stephen Lin, Damon Wing Kee Wong, Jiang Liu, Tin A. Tun, Meenakshi Mahesh, Shamira A. Perera, Tin Aung

American Journal of Ophthalmology | July 2019, Vol 203: pp. 37-45

Publication

Identifying and ranking potential driver genes of Alzheimer’s Disease using multi-view evidence aggregation

Sumit Mukherjee, Thanneer Perumal, Kenneth Daily, Solveig Sieberts, Larsson Omberg, Christoph Preuss, Gregory Carter, Lara Mangravite, Benjamin Logsdon

OUP Bioinformatics | July 2019, Vol 35(14)

Special issue for ISMB/ECCB 2019

Publication

Comparing Three Methods for Reducing Psychotropic Use in Older Demented Spanish Care Home Residents.

Bill Weeks, Manish K. Mishra, David Curto, Curtis L. Petersen, Pedro Cano, Yulin Hswen, Silvia Villamarín Serra, Glyn Elwyn, Marjorie M. Godfrey, Pedro Sánchez Soro, José Francisco Tomás

Journal of the American Geriatrics Society | June 2019, Vol 67(7): pp. 1444-1453

Publication

iPhys: An Open Non-Contact Imaging-Based Physiological Measurement Toolbox

Daniel McDuff, Ethan Blackford

e of the IEEE Engineering in Medicine and Biology SocietyInternational Conferenc | June 2019

Github Project

Publication

Augmenting subnetwork inference with information extracted from the scientific literature

Sid Kiblawi, Deborah Chasman, Amanda Henning, Eunju Park, Hoifung Poon, Michael Gould, Paul Ahlquist, Mark Craven

PLOS Computational Biology | June 2019

Publication

Document-Level N-ary Relation Extraction with Multiscale Representation Learning

Robin Jia, Cliff Wong, Hoifung Poon

NAACL 2019 | June 2019

Tool

Exercise Recognition from Wearable Sensors

This data set contains accelerometer and gyroscope recordings from over 200 participants performing various gym exercises. This data set is described in more detail in the associated manuscript: Morris, D., Saponas, T. S., Guillory, A.,…

GitHub Publication

Medical, health, and genomics

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