illustration of DNA strand and abstract shapes on a computer screen on a green gradient background

Medical, health, and genomics

Digital pathology helps decode tumor microenvironments for precision immunotherapy. GigaPath is a novel vision transformer that can scale to gigapixel whole-slide images by adapting dilated attention for digital pathology. In joint work with Providence and UW, we’re sharing Prov-GigaPath, the first whole-slide pathology foundation model pretrained on large-scale real-world data, for advancing clinical research and discovery.

GigaPath: Whole-Slide Foundation Model for Digital Pathology

Research Forum Ep2 | Panel | Transforming the Natural Sciences with AI

Research Forum 2 | Panel Discussion: Transforming the Natural Sciences with AI

white icons of first aid kit, DNA strand, laptop monitor with overlapping eye, and microscope on a blue and green gradient background

Scaling early detection of esophageal cancer with AI

female doctor / nurse reviewing a tablet

Microsoft Health Futures

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Published Date

Publication

Nef-Specific CD8+ T Cell Responses Contribute to HIV-1 Immune Control

Emily Adland, Jonathan M. Carlson, Paolo Paioni, Henrik Kloverpris, Roger Shapiro, Anthony Ogwu, Lynn Riddell, Graz Luzzi, Fabian Chen, Thambiah Balachandran, David Heckerman, Anette Stryhn, Anne Edwards, Thumbi Ndung'u, Bruce D Walker, Soren Buus, Philip Goulder , Philippa C Matthews

PloS One | September 2013

Publication

Transcriptional Hierarchies Regulating Early Blood Cell Development

Moignarg V, Woodhouse S, Jasmin Fisher, Gottgens B

Blood Cells, Molecules, and Diseases | September 2013

Publication

Multi-Atlas Label Propagation with Atlas Encoding by Randomized Forests [Special Left Field Award]

D. Zikic, Ben Glocker, Antonio Criminisi

September 2013

Publication

Epigenome-wide association studies without the need for cell-type composition

James Zhou, Christoph Lippert, David Heckerman, Martin Aryee, Jennifer Listgarten

Nature Methods | August 2013

Publication

Increased Sequence Coverage through Combined Targeting of Variant and Conserved Epitopes Correlates with Control of HIV Replication

Justine Sunshine, Moon Kim, Jonathan M. Carlson, David Heckerman, Julie Czartoski, Stephen A. Migueles, Janine Maenza, M. Juliana McElrath, James I. Mullins, Nicole Frahm

Journal of Virology | August 2013, Vol 88(2): pp. 1354-1365

Publication

Cellular resolution models of cis-regulatory input function in the entire Drosophila embryo

Ilsley G, Fisher J, Apweiler R, DePace A, Luscombe N, Jasmin Fisher

August 2013

Publication

HLA-A*68: 02-restricted Gag-specific cytotoxic T lymphocyte responses can drive selection pressure on HIV but are subdominant and ineffective

Henrik N. Klverpris, Anette Stryhn, Mikkel Harndahl, Jonathan M. Carlson, Alasdair J. Leslie, Fabian Chen, Lynn Riddell, Joseph Mulenga, Bruce D. Walker, Thumbi N'dung'u, Soren Buus , Philip Goulder

AIDS Official Journal of the International Aids Society | July 2013

Video

Research Bits: Lori Clarke and Wei Le

July 16, 2013 | Lori Clarke and Wei Le

“Research Bits” provide a glimpse into the research being conducted around the world through brief interviews with researchers. First, Lori Clarke from the University of Massachusetts is investigating what we have learned in software engineering…

04:17

Video

2013 Faculty Fellowship Winners Perspectives

July 16, 2013 | Animashree Anandkuma and Monica Tentori

In these two short interviews, two of the winners of the 2013 Faculty Fellowship Award—Animashree Anandkuma and Monica Tantori—talk about their research and how being selected for the award will help them advance their work.…

08:12

Video

The Coming Genomics Software Revolution?

July 16, 2013 | David Haussler, David Heckerman, David Patterson, and George Varghese

With the cost to sequence a full human genome soon to fall below US$1,000, most people will have their DNA sequenced and stored in a database along with their medical records. The hardware revolution has…

David Haussler, George Varghese posing for the camera

01:25:22

Medical, health, and genomics

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