Publication BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining Renqian Luo, Liai Sun, Yingce Xia, Tao Qin, Sheng Zhang, Hoifung Poon, Tie-Yan Liu Briefings in Bioinformatics | November 2022, Vol 23(6) Github
Publication Multiscale profiling of protease activity in cancer Ava P. Amini, Jesse D. Kirkpatrick, Cathy S. Wang, Alex M. Jaeger, Susan Su, Santiago Naranjo, Qian Zhong, Christina M. Cabana, Tyler Jacks, Sangeeta N. Bhatia Nature Communications | October 2022, Vol 13(1)
Publication Pervasive Therapy: Designing Conversation-Based Interfaces for Ecological Momentary Intervention Robert Bowman, Orla Cooney, Anja Thieme, Benjamin R. Cowan, Gavin Doherty IEEE Pervasive Computing | October 2022, Vol 21(4): pp. 55-63
Publication Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez-Valle, Hoifung Poon, Ozan Oktay The European Conference on Computer Vision (ECCV) | October 2022 Video Access Access Project
Publication Protein structure generation via folding diffusion Kevin E. Wu, Kevin K. Yang, Rianne van den Berg, James Y. Zou, Alex X. Lu, Ava P. Amini arXiv | September 2022
Publication Designing Human-Centered AI for Mental Health: Developing Clinically Relevant Applications for Online CBT Treatment Anja Thieme, Maryann Hanratty, Maria Lyons, Jorge E. Palacios , Rita Faia Marques, Cecily Morrison, Gavin Doherty ACM ToCHI | August 2022 accepted for publication (to appear) Project
Publication Protease activity analysis: A toolkit for analyzing enzyme activity data Ava P. Soleimany, Carmen Martin-Alonso, Melodi Anahtar, Cathy S. Wang, Sangeeta N. Bhatia ACS Omega | July 2022, Vol 7(28): pp. 24292-24301
Publication A Comparison of Wearable Tonometry, Photoplethysmography, and Electrocardiography for Cuffless Measurement of Blood Pressure in an Ambulatory Setting Becky Mieloszyk, Hope Twede, Jonathan Lester, Jeremiah (Miah) Wander, Sumit Basu, Gabe Cohn, Greg Smith, Sidhant Gupta, Desney Tan, Nicolas Villar, Moni Wolf, Sailaja Malladi, Ron Paulsen, Scott Saponas IEEE Journal of Biomedical and Health Informatics | July 2022, Vol 26(7): pp. 2864-2875
Publication Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning Alex X. Lu, Amy X. Lu, Iva Pritišanac, Taraneh Zarin, Julie D. Forman-Kay, Alan M. Moses PLOS Computational Biology | July 2022, Vol 18(6) Project
Publication Host protease activity classifies pneumonia etiology Melodi Anahtar, Leslie W. Chan, Henry Ko, Aditya Rao, Ava P. Soleimany, Purvesh Khatri, Sangeeta N. Bhatia Proceedings of the National Academy of Sciences of the United States of America | June 2022, Vol 19(25)
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