公開日 Imaging Transformer for MRI Denoising: a Scalable Model Architecture that enables SNR<<1 Imaging Hui Xue, Sarah M. Hooper, Rhodri H. Davies, T. Treibel, Iain Pierce, John Stairs, Joseph Naegele, Charlotte Manisty, James C. Moon, A. Campbell-Washburn, Peter Kellman, Michael Hansen April 2025 arXiv | April 2025 プロジェクト
公開日 Toward deep learning sequence–structure co-generation for protein design Chentong Wang, Sarah Alamdari, Carles Domingo-Enrich, Ava P. Amini, Kevin Kaichuang Yang Current Opinion in Structural Biology | March 2025
公開日 Impact of Lewis Acids on the Reactivity of a High-Valent Cu(III) Complex. Raju Eerlapally, Divya Lakshmi Hareendran, Lucia Velasco, Asterios Charisiadis, Maxime Sauvan, Jayashrita Debnath, Dooshaye Moonshiram, A. Draksharapu Inorganic chemistry | March 2025
公開日 A unified deep framework for peptide–major histocompatibility complex–T cell receptor binding prediction Yunxiang Zhao, Jijun Yu, Yixin Su, You Shu, Enhao Ma, Jing Wang, Shuyang Jiang, Congwen Wei, Dongsheng Li, Zhen Huang, Gong Cheng, Hongguang Ren, Jiannan Feng Nature Machine Intelligence | February 2025, 巻7: pp. 650-660
公開日 Consequences of training data composition for deep learning models in single-cell biology Ajay Nadig, Akshaya Thoutam, Madeline Hughes, Anay Gupta, Andrew W. Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S. Winter, Ava P. Amini, Lorin Crawford bioRxiv | February 2025 プロジェクト
公開日 Addressing biomedical data challenges and opportunities to inform a large-scale data lifecycle for enhanced data sharing, interoperability, analysis, and collaboration across stakeholders Vivek Sriram, Ashley Conard, Ilyana Rosenberg, Dokyoon Kim, Scott Saponas, Amanda K. Hall Scientific Reports | February 2025, 巻15
公開日 Exploring Scalable Medical Image Encoders Beyond Text Supervision Fernando Pérez-García, Harshita Sharma, Sam Bond-Taylor, Kenza Bouzid, Valentina Salvatelli, Maximilian Ilse, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Matthew P Lungren, Noel Codella, Stephanie Hyland, Javier Alvarez-Valle, Ozan Oktay Nature Machine Intelligence | January 2025, 巻7: pp. 119-130 アクセス プロジェクト
公開日 BioAgents: Democratizing Bioinformatics Analysis with Multi-Agent Systems Nikita Mehandru, Amanda K. Hall, Olesya Melnichenko, Yulia Dubinina, Daniel Tsirulnikov, David Bamman, Ahmed Alaa, Scott Saponas, V. Malladi January 2025 January 2025
公開日 Benchmarking uncertainty quantification for protein engineering Kevin P. Greenman, Ava P. Amini, Kevin Kaichuang Yang PLOS Computational Biology | January 2025, 巻21
公開日 Evaluating the role of pre-training dataset size and diversity on single-cell foundation model performance Alan DenAdel, Madeline Hughes, Akshaya Thoutam, Anay Gupta, Nicolo Fusi, Andrew W. Navia, Srivatsan Raghavan, Peter S. Winter, Ava P. Amini, Lorin Crawford bioRxiv | December 2024 プロジェクト
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